Description
PathGen turns fragmented pathogen genomics data into real-time, actionable insights, bringing researchers, public-health authorities, and clinical teams into a shared, secure environment to analyse genomic data, track pathogen evolution, and generate intelligence for early outbreak response. It provides end-to-end pathogen intelligence infrastructure spanning sequencing pipelines to real-time dashboards, including standardised genomic data pipelines for ingesting, validating, annotating and processing pathogen genomes; AI-powered analytics for lineage identification, mutation flagging, sample clustering and risk assessment; interactive dashboards for variant tracking and transmission dynamics; cross-institution workspaces for collaboration between labs, public health agencies and clinical institutions; advanced visualisation tools such as phylogenetic trees and mutation heatmaps; and privacy/governance controls supporting national regulations and cross-border data-sharing. The platform is co-developed with Duke-NUS (Centre for Outbreak Preparedness) and was first publicly previewed on December 1, 2025 at an event at the Temasek Shophouse in Singapore, co-hosted with Temasek Foundation, with collaborators/partners including Sequentia Biotech, AWS, pathogensurveillance.net, and the University of Sydney. It is currently in beta.